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AGAP11 ArfGAP with GTPase domain, ankyrin repeat and PH domain 11 [ Homo sapiens (human) ]

Gene ID: 119385, updated on 24-Nov-2020

Summary

Official Symbol
AGAP11provided by HGNC
Official Full Name
ArfGAP with GTPase domain, ankyrin repeat and PH domain 11provided by HGNC
Primary source
HGNC:HGNC:29421
See related
Ensembl:ENSG00000271880
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in fat (RPKM 52.1), prostate (RPKM 22.0) and 20 other tissues See more
Orthologs

Genomic context

See AGAP11 in Genome Data Viewer
Location:
10q23.2
Exon count:
11
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (86970336..87010226)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (88728239..88769960)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 4131 Neighboring gene multimerin 2 Neighboring gene synuclein gamma Neighboring gene ADIRF antisense RNA 1 Neighboring gene adipogenesis regulatory factor Neighboring gene BMS1 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 4381 Neighboring gene family with sequence similarity 25 member A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • ankyrin repeat and GTPase domain Arf GTPase activating protein 11
  • arf-GAP with GTPase, ANK repeat and PH domain-containing protein 11

Clone Names

  • KIAA1975

Gene Ontology Provided by GOA

Function Evidence Code Pubs
GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171046.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136982

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    86970336..87010226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_133447.3: Suppressed sequence

    Description
    NM_133447.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
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