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LOC119353966 constitutive photomorphogenesis protein 10-like [ Triticum dicoccoides ]

Gene ID: 119353966, updated on 14-Dec-2023

Summary

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Gene symbol
LOC119353966
Gene description
constitutive photomorphogenesis protein 10-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Triticum dicoccoides
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Genomic context

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See LOC119353966 in Genome Data Viewer
Location:
chromosome: 2A
Exon count:
12
Annotation release Status Assembly Chr Location
100 current WEW_v2.0 (GCF_002162155.1) 2A NC_041382.1 (156956689..156964467)

Chromosome 2A - NC_041382.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119353963 Neighboring gene omega-hydroxypalmitate O-feruloyl transferase-like Neighboring gene involucrin-like Neighboring gene uncharacterized LOC119353967

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_041382.1 Chromosome 2A Reference WEW_v2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
constitutive photomorphogenesis protein 10-like; glucan endo-1,3-beta-glucosidase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Triticum dicoccoides Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference WEW_v2.0

Genomic

  1. NC_041382.1 Reference WEW_v2.0

    Range
    156956689..156964467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037620668.1 → XP_037476565.1  glucan endo-1,3-beta-glucosidase 4-like isoform X2

    Conserved Domains (3) summary
    smart00768
    Location:363 → 447
    X8; Possibly involved in carbohydrate binding
    cl00154
    Location:553 → 692
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    cl23725
    Location:25 → 346
    Glyco_hydro; Glycosyl hydrolases

  2. XM_037620667.1 → XP_037476564.1  constitutive photomorphogenesis protein 10-like isoform X1

    Conserved Domains (1) summary
    cl00154
    Location:50 → 189
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
Nucleotide Protein
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