PSTK phosphoseryl-tRNA kinase [Homo sapiens (human)] - Gene

Summary

Official Symbol: PSTKprovided by HGNC
Official Full Name: phosphoseryl-tRNA kinaseprovided by HGNC
Primary source: HGNC:HGNC:28578
See related: Ensembl:ENSG00000179988 MIM:611310; AllianceGenome:HGNC:28578
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: C10orf89
Summary: Predicted to enable kinase activity and tRNA binding activity. Predicted to be involved in phosphorylation; selenocysteinyl-tRNA(Sec) biosynthetic process; and translation. Predicted to act upstream of or within selenocysteine incorporation. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in bone marrow (RPKM 1.8), testis (RPKM 1.5) and 25 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 10q26.13

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
110	current	GRCh38.p14 (GCF_000001405.40)	10	NC_000010.11 (122980401..122990390)
110	current	T2T-CHM13v2.0 (GCF_009914755.1)	10	NC_060934.1 (123855384..123865385)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	10	NC_000010.10 (124739917..124749906)

Chromosome 10 - NC_000010.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Same but different - Molecular comparison of human KTI12 and PSTK.
Title: Same but different - Molecular comparison of human KTI12 and PSTK.
Observational study of gene-disease association. (HuGE Navigator)
Title: Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.

Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Homologs of the PSTK gene: The PSTK gene is conserved in chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, and frog.
Orthologs from Annotation Pipeline: 328 organisms have orthologs with human gene PSTK
Orthologs

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables L-seryl-tRNA(Sec) kinase activity	IEA Inferred from Electronic Annotation more info
enables kinase activity	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables tRNA binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed

Process	Evidence Code	Pubs
involved_in phosphorylation	IEA Inferred from Electronic Annotation more info
involved_in selenocysteinyl-tRNA(Sec) biosynthetic process	IEA Inferred from Electronic Annotation more info
involved_in translation	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: L-seryl-tRNA(Sec) kinase

Names: O-phosphoseryl-tRNA(Sec) kinase

NP_001350460.1

EC 2.7.1.164

NP_699167.2

EC 2.7.1.164

XP_016871130.1

EC 2.7.1.164

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001363531.2 → NP_001350460.1 L-seryl-tRNA(Sec) kinase isoform 1

Status: VALIDATED

Source sequence(s)

AC073585

Consensus CDS

CCDS86153.1

UniProtKB/TrEMBL

H7BYY4

Related

ENSP00000384653.3, ENST00000406217.8

Conserved Domains (1) summary

TIGR03575
Location:20 → 357

selen_PSTK_euk; L-seryl-tRNA(Sec) kinase, eukaryotic
NM_153336.3 → NP_699167.2 L-seryl-tRNA(Sec) kinase isoform 2

See identical proteins and their annotated locations for NP_699167.2

Status: VALIDATED

Source sequence(s)

AC073585, BC035344

Consensus CDS

CCDS7633.1

UniProtKB/Swiss-Prot

Q6ZSS9, Q8IV42

Related

ENSP00000357882.3, ENST00000368887.7

Conserved Domains (2) summary

pfam13671
Location:20 → 212

AAA_33; AAA domain

cl17190
Location:20 → 301

NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...