Format

Send to:

Choose Destination

Arpc1b actin related protein 2/3 complex, subunit 1B [ Mus musculus (house mouse) ]

Gene ID: 11867, updated on 31-Jan-2019

Summary

Official Symbol
Arpc1bprovided by MGI
Official Full Name
actin related protein 2/3 complex, subunit 1Bprovided by MGI
Primary source
MGI:MGI:1343142
See related
Ensembl:ENSMUSG00000029622
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
L72; 41kDa; SOP2Hs; p41-ARC; AA408064; AA408534; AA571392; AF007010; AW208418
Expression
Broad expression in colon adult (RPKM 219.0), ovary adult (RPKM 201.5) and 23 other tissues See more
Orthologs

Genomic context

See Arpc1b in Genome Data Viewer
Location:
5; 5 G2
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (145114256..145128186)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (145875125..145889055)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700018F24 gene Neighboring gene actin related protein 2/3 complex, subunit 1A Neighboring gene PDGFA associated protein 1 Neighboring gene BUD31 homolog Neighboring gene pentatricopeptide repeat domain 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102425

Gene Ontology Provided by MGI

Function Evidence Code Pubs
actin binding IEA
Inferred from Electronic Annotation
more info
 
actin filament binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to actin filament binding ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
structural constituent of cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
Arp2/3 complex-mediated actin nucleation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Arp2/3 complex-mediated actin nucleation ISO
Inferred from Sequence Orthology
more info
 
regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Arp2/3 protein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Arp2/3 protein complex ISO
Inferred from Sequence Orthology
more info
 
Arp2/3 protein complex TAS
Traceable Author Statement
more info
PubMed 
actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
tubulobulbar complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
actin-related protein 2/3 complex subunit 1B
Names
arp2/3 complex 41 kDa subunit

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023142.2NP_075631.2  actin-related protein 2/3 complex subunit 1B

    See identical proteins and their annotated locations for NP_075631.2

    Status: VALIDATED

    Source sequence(s)
    AK153510, AK159371, BF660612
    Consensus CDS
    CCDS19856.1
    UniProtKB/Swiss-Prot
    Q9WV32
    Related
    ENSMUSP00000082822.6, ENSMUST00000085679.12
    Conserved Domains (2) summary
    sd00039
    Location:1150
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:45264
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

    Range
    145114256..145128186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center