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RPL23AP7 ribosomal protein L23a pseudogene 7 [ Homo sapiens (human) ]

Gene ID: 118433, updated on 10-Oct-2023

Summary

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Official Symbol
RPL23AP7provided by HGNC
Official Full Name
ribosomal protein L23a pseudogene 7provided by HGNC
Primary source
HGNC:HGNC:17336
See related
AllianceGenome:HGNC:17336
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23AL1; bA395L14.9; RPL23A_6_267
Expression
Ubiquitous expression in fat (RPKM 9.7), brain (RPKM 8.2) and 25 other tissues See more
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Genomic context

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See RPL23AP7 in Genome Data Viewer
Location:
2q14.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113611239..113627138, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (114035969..114051866, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114368816..114384715, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907875 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:114340974-114341805 Neighboring gene WASP family homolog 2, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114349651-114350508 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114354507-114355491 Neighboring gene uncharacterized LOC124907874 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11884 Neighboring gene DEAD/H-box helicase 11 like 2 (pseudogene) Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11885 Neighboring gene RAB, member of RAS oncogene family like 2A Neighboring gene uncharacterized LOC112268423 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114413451-114414008 Neighboring gene SNRPA1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence of a cDNA clone (SUBT1) partly homologous to a human subtelomeric repeat sequence. Lagercrantz J, et al. Biochem Mol Biol Int, 1996 May. PMID 8799457
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ribosomal protein L23a-like 1

Clone Names

  • MGC104442

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_000029.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in its 5'-most exon and lacks an internal 5' exon, compared to variant 1.
    Source sequence(s)
    BC105600, BE464804, BX643196, DA484374, DA864496

  2. NR_024528.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BE464804, BG335018, BI464848, BX643196, DA484374, DA864496

  3. NR_024529.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal 5' exon, compared to variant 1.
    Source sequence(s)
    BE464804, BI464848, BX643196, DA484374, DA864496

  4. NR_024530.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in its 5'-most exon, lacks an internal 5' exon, and differs in the presence and absence of exons at its 3' end, compared to variant 1.
    Source sequence(s)
    AW340513, BI464848, BM661697, DA864496

  5. NR_024531.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate splice site in its 5'-most exon, lacks an internal 5' exon, and differs in the presence and absence of exons at its 3' end, compared to variant 1.
    Source sequence(s)
    AW340513, BM661697, DA864496

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    113611239..113627138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    114035969..114051866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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