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RPL23AP7 ribosomal protein L23a pseudogene 7 [ Homo sapiens (human) ]

Gene ID: 118433, updated on 13-May-2022

Summary

Official Symbol
RPL23AP7provided by HGNC
Official Full Name
ribosomal protein L23a pseudogene 7provided by HGNC
Primary source
HGNC:HGNC:17336
See related
AllianceGenome:HGNC:17336
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23AL1; bA395L14.9; RPL23A_6_267
Expression
Ubiquitous expression in fat (RPKM 9.7), brain (RPKM 8.2) and 25 other tissues See more
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Genomic context

See RPL23AP7 in Genome Data Viewer
Location:
2q14.1
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113611239..113627138, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (114035969..114051866, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114368816..114384715, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907875 Neighboring gene WASP family homolog 2, pseudogene Neighboring gene uncharacterized LOC124907874 Neighboring gene DEAD/H-box helicase 11 like 2 (pseudogene) Neighboring gene RAB, member of RAS oncogene family like 2A Neighboring gene uncharacterized LOC112268423 Neighboring gene SNRPA1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_000029.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in its 5'-most exon and lacks an internal 5' exon, compared to variant 1.
    Source sequence(s)
    BC105600, BE464804, BX643196, DA484374, DA864496
  2. NR_024528.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BE464804, BG335018, BI464848, BX643196, DA484374, DA864496
  3. NR_024529.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal 5' exon, compared to variant 1.
    Source sequence(s)
    BE464804, BI464848, BX643196, DA484374, DA864496
  4. NR_024530.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in its 5'-most exon, lacks an internal 5' exon, and differs in the presence and absence of exons at its 3' end, compared to variant 1.
    Source sequence(s)
    AW340513, BI464848, BM661697, DA864496
  5. NR_024531.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate splice site in its 5'-most exon, lacks an internal 5' exon, and differs in the presence and absence of exons at its 3' end, compared to variant 1.
    Source sequence(s)
    AW340513, BM661697, DA864496

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    113611239..113627138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    114035969..114051866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)