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PCAT4 prostate cancer associated transcript 4 [ Homo sapiens (human) ]

Gene ID: 118425, updated on 13-May-2022

Summary

Official Symbol
PCAT4provided by HGNC
Official Full Name
prostate cancer associated transcript 4provided by HGNC
Primary source
HGNC:HGNC:24853
See related
Ensembl:ENSG00000251321 MIM:609717; AllianceGenome:HGNC:24853
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GDEP; PCA4; PCAN1
Expression
Restricted expression toward prostate (RPKM 24.7) See more
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Genomic context

See PCAT4 in Genome Data Viewer
Location:
4q21.21
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (79827471..79863247)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (83163872..83199659)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (80748625..80784401)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2469 Neighboring gene uncharacterized LOC105377302 Neighboring gene Sharpr-MPRA regulatory region 5843 Neighboring gene small nucleolar RNA SNORA75 Neighboring gene ANTXR cell adhesion molecule 2 Neighboring gene U2 spliceosomal RNA Neighboring gene karyopherin subunit alpha 2 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

General gene information

Markers

Other Names

  • gene differentially expressed in prostate
  • prostate cancer associated transcript 4 (non-protein coding)
  • prostate cancer gene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026555.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC118141, AK056825
    Related
    ENST00000504263.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    79827471..79863247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    83163872..83199659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_058168.2: Suppressed sequence

    Description
    NM_058168.2: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.