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LOC117924012 nuclear transcription factor Y subunit A-7-like [ Vitis riparia (riverbank grape) ]

Gene ID: 117924012, updated on 22-Oct-2023

Summary

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Gene symbol
LOC117924012
Gene description
nuclear transcription factor Y subunit A-7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis riparia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC117924012 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 10 NC_048440.1 (11267991..11285345)

Chromosome 10 - NC_048440.1Genomic Context describing neighboring genes Neighboring gene receptor kinase-like protein Xa21 Neighboring gene receptor kinase-like protein Xa21 Neighboring gene homeobox-leucine zipper protein HOX32-like Neighboring gene kxDL motif-containing protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048440.1 Chromosome 10 Reference EGFV_Vit.rip_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit A-7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EGFV_Vit.rip_1.0 Primary Assembly

Genomic

  1. NC_048440.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Range
    11267991..11285345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034842555.1 → XP_034698446.1  nuclear transcription factor Y subunit A-7-like

    Conserved Domains (1) summary
    smart00521
    Location:111 → 171
    CBF; CCAAT-Binding transcription Factor

  2. XM_034842554.1 → XP_034698445.1  nuclear transcription factor Y subunit A-7-like

    Conserved Domains (1) summary
    smart00521
    Location:111 → 171
    CBF; CCAAT-Binding transcription Factor
Nucleotide Protein
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