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LOC117843514 glucan endo-1,3-beta-glucosidase 4-like [ Setaria viridis ]

Gene ID: 117843514, updated on 24-Apr-2024

Summary

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Gene symbol
LOC117843514
Gene description
glucan endo-1,3-beta-glucosidase 4-like
Locus tag
SEVIR_2G377200v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria viridis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC117843514 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Setaria_viridis_v2.0 (GCF_005286985.1) 2 NC_048264.1 (42865451..42873017)

Chromosome 2 - NC_048264.1Genomic Context describing neighboring genes Neighboring gene alpha-amylase/trypsin inhibitor Neighboring gene probable homogentisate phytyltransferase 2, chloroplastic Neighboring gene adenylate cyclase, terminal-differentiation specific-like Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048264.1 Chromosome 2 Reference Setaria_viridis_v2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucan endo-1,3-beta-glucosidase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria viridis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_viridis_v2.0 Primary Assembly

Genomic

  1. NC_048264.1 Reference Setaria_viridis_v2.0 Primary Assembly

    Range
    42865451..42873017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034724127.1 → XP_034580018.1  glucan endo-1,3-beta-glucosidase 4-like

Nucleotide Protein
Heading Accession and Version

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