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MIR4280HG MIR4280 host gene [ Homo sapiens (human) ]

Gene ID: 117751736, updated on 28-Oct-2024

Summary

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Official Symbol
MIR4280HGprovided by HGNC
Official Full Name
MIR4280 host geneprovided by HGNC
Primary source
HGNC:HGNC:54975
See related
Ensembl:ENSG00000233828 AllianceGenome:HGNC:54975
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See MIR4280HG in Genome Data Viewer
Location:
5q14.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (87048906..87122195, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (87529248..87602848, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (86344723..86418012, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2059 Neighboring gene MPRA-validated peak5330 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_86917 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:86173964-86174498 Neighboring gene ribosomal protein L10a pseudogene 9 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:86224749-86225498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22747 Neighboring gene uncharacterized LOC105379065 Neighboring gene PP565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22749 Neighboring gene MPRA-validated peak5331 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22750 Neighboring gene uncharacterized LOC101929380 Neighboring gene RN7SK pseudogene 34 Neighboring gene MPRA-validated peak5332 silencer Neighboring gene microRNA 4280 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22751 Neighboring gene long intergenic non-protein coding RNA 1949 Neighboring gene Sharpr-MPRA regulatory region 12969 Neighboring gene Sharpr-MPRA regulatory region 46 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:86563777-86564664 Neighboring gene RNA, 7SL, cytoplasmic 629, pseudogene Neighboring gene RAS p21 protein activator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186582.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC109492
    Related
    ENST00000666497.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    87048906..87122195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    87529248..87602848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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