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Rpl6 ribosomal protein L6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 117042, updated on 3-Jun-2018
Official Symbol
Rpl6provided by RGD
Official Full Name
ribosomal protein L6provided by RGD
Primary source
RGD:619826
See related
Ensembl:ENSRNOG00000025936
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
60S ribosomal subunit protein [RGD, Feb 2006]
Expression
Biased expression in Spleen (RPKM 3663.1), Thymus (RPKM 3203.7) and 9 other tissues See more
Orthologs
See Rpl6 in Genome Data Viewer
Location:
12q16
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (40877578..40882032, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 12 NC_005111.3 (42744693..42749153, complement)

Chromosome 12 - NC_005111.4Genomic Context describing neighboring genes Neighboring gene TRAF type zinc finger domain containing 1 Neighboring gene HECT domain E3 ubiquitin protein ligase 4 Neighboring gene protein tyrosine phosphatase, non-receptor type 11 Neighboring gene uncharacterized LOC108352450

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC93267

Gene Ontology Provided by RGD

Function Evidence Code Pubs
5.8S rRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
cadherin binding ISO
Inferred from Sequence Orthology
more info
 
mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic translation ISS
Inferred from Sequence or Structural Similarity
more info
 
ribosomal large subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
A band IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasmic ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
 
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
polysomal ribosome ISS
Inferred from Sequence or Structural Similarity
more info
 
rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
60S ribosomal protein L6
Names
neoplasm-related protein C140

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053971.3NP_446423.2  60S ribosomal protein L6

    See identical proteins and their annotated locations for NP_446423.2

    Status: PROVISIONAL

    Source sequence(s)
    BC097295
    UniProtKB/Swiss-Prot
    P21533
    Related
    ENSRNOP00000038065.5, ENSRNOT00000034951.5
    Conserved Domains (3) summary
    COG2163
    Location:150274
    RPL14A; Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]
    cd13156
    Location:146298
    KOW_RPL6; KOW motif of Ribosomal Protein L6
    pfam03868
    Location:5184
    Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005111.4 Reference Rnor_6.0 Primary Assembly

    Range
    40877578..40882032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006249378.3XP_006249440.1  60S ribosomal protein L6 isoform X1

    See identical proteins and their annotated locations for XP_006249440.1

    UniProtKB/Swiss-Prot
    P21533
    Conserved Domains (3) summary
    COG2163
    Location:150274
    RPL14A; Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]
    cd13156
    Location:146298
    KOW_RPL6; KOW motif of Ribosomal Protein L6
    pfam03868
    Location:5184
    Ribosomal_L6e_N; Ribosomal protein L6, N-terminal domain

Alternate Rn_Celera

Genomic

  1. AC_000080.1 Alternate Rn_Celera

    Range
    37011947..37015493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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