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cct6a chaperonin containing TCP1, subunit 6A (zeta 1) [ Danio rerio (zebrafish) ]

Gene ID: 116994, updated on 1-Aug-2018

Summary

Official Symbol
cct6aprovided by ZNC
Official Full Name
chaperonin containing TCP1, subunit 6A (zeta 1)provided by ZNC
Primary source
ZFIN:ZDB-GENE-011018-2
See related
Ensembl:ENSDARG00000021252 Vega:OTTDARG00000031682
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fa95c01; wu:fa95c01
Orthologs

Genomic context

See cct6a in Genome Data Viewer
Location:
chromosome: 21
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (41820359..41839678, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (41807149..41826468, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2, regulatory subunit B, beta b Neighboring gene transcription elongation regulator 1b (CA150) Neighboring gene ring finger protein 14 Neighboring gene endonuclease, polyU-specific 2 Neighboring gene gamma-aminobutyric acid (GABA) A receptor, gamma 2

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
protein folding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chaperonin-containing T-complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
T-complex protein 1 subunit zeta

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201290.1NP_958447.1  T-complex protein 1 subunit zeta

    See identical proteins and their annotated locations for NP_958447.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044393
    UniProtKB/TrEMBL
    Q7ZYX4
    Related
    ENSDARP00000016831.7, ENSDART00000009484.10
    Conserved Domains (2) summary
    cd03342
    Location:7526
    TCP1_zeta; TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL) ...
    TIGR02347
    Location:3530
    chap_CCT_zeta; T-complex protein 1, zeta subunit

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    41820359..41839678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005161447.2XP_005161504.1  T-complex protein 1 subunit zeta isoform X1

    See identical proteins and their annotated locations for XP_005161504.1

    UniProtKB/TrEMBL
    Q7ZYX4
    Related
    ENSDARP00000136804.2, OTTDARP00000034953, ENSDART00000160908.2, OTTDART00000044139
    Conserved Domains (2) summary
    cd03342
    Location:7526
    TCP1_zeta; TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL) ...
    TIGR02347
    Location:3530
    chap_CCT_zeta; T-complex protein 1, zeta subunit
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