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CLRN1-AS1 CLRN1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 116933, updated on 25-Jan-2022

Summary

Official Symbol
CLRN1-AS1provided by HGNC
Official Full Name
CLRN1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:30895
See related
AllianceGenome:HGNC:30895
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
UCRP; CLRN1OS
Expression
Low expression observed in reference dataset See more
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Genomic context

See CLRN1-AS1 in Genome Data Viewer
Location:
3q25.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (150972678..151080726)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (150690465..150798513)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MINDY family member 4B Neighboring gene Sharpr-MPRA regulatory region 9248 Neighboring gene clarin 1 Neighboring gene Sharpr-MPRA regulatory region 19 Neighboring gene mediator complex subunit 12L Neighboring gene RNA, 5S ribosomal pseudogene 145

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • CLRN1 antisense RNA 1 (non-protein coding)
  • Usher critical region protein pseudogene
  • clarin 1 opposite strand

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024066.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020636, AF388367, AK126442

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    150972678..151080726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006573.1: Suppressed sequence

    Description
    NG_006573.1: This RefSeq was permanently suppressed because it is now thought that this gene is transcribed.
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