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RPL39L ribosomal protein L39 like [ Homo sapiens (human) ]

Gene ID: 116832, updated on 23-Nov-2021

Summary

Official Symbol
RPL39Lprovided by HGNC
Official Full Name
ribosomal protein L39 likeprovided by HGNC
Primary source
HGNC:HGNC:17094
See related
Ensembl:ENSG00000163923 MIM:607547
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
L39-2; RPL39L1
Summary
This gene encodes a protein sharing high sequence similarity with ribosomal protein L39. Although the name of this gene has been referred to as 'ribosomal protein L39' in the public databases, its official name is 'ribosomal protein L39-like'. It is not currently known whether the encoded protein is a functional ribosomal protein or whether it has evolved a function that is independent of the ribosome. [provided by RefSeq, Jul 2008]
Expression
Biased expression in testis (RPKM 67.7), lymph node (RPKM 4.1) and 2 other tissues See more
Orthologs
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Genomic context

See RPL39L in Genome Data Viewer
Location:
3q27.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (187120948..187139496, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (186838736..186857284, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ST6 beta-galactoside alpha-2,6-sialyltransferase 1 Neighboring gene ST6GAL1 promoter P2 Neighboring gene ST6GAL1 promoter P1 Neighboring gene ribosomal protein L39 pseudogene 19 Neighboring gene uncharacterized LOC101929106 Neighboring gene uncharacterized LOC105374260 Neighboring gene receptor transporter protein 1 Neighboring gene MBL associated serine protease 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in spermatogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic large ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
60S ribosomal protein L39-like
Names
60S ribosomal protein L39-2
large ribosomal subunit protein eL39-like
ribosomal protein L39-like 1
ribosomal protein L39-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_052969.3NP_443201.1  60S ribosomal protein L39-like

    See identical proteins and their annotated locations for NP_443201.1

    Status: REVIEWED

    Source sequence(s)
    BC012328, BM769958, BU674063
    Consensus CDS
    CCDS3286.1
    UniProtKB/Swiss-Prot
    Q96EH5
    Related
    ENSP00000296277.4, ENST00000296277.9
    Conserved Domains (1) summary
    pfam00832
    Location:950
    Ribosomal_L39; Ribosomal L39 protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    187120948..187139496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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