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cbx4 chromobox homolog 4 (Pc class homolog, Drosophila) [ Xiphophorus hellerii (green swordtail) ]

Gene ID: 116735297, updated on 18-Mar-2024

Summary

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Gene symbol
cbx4
Gene description
chromobox homolog 4 (Pc class homolog, Drosophila)
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus hellerii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Xiphophorus_hellerii-4.1 (GCF_003331165.1) 16 NC_045687.1 (13717932..13727435)

Chromosome 16 - NC_045687.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 9 like Neighboring gene alpha glucosidase Neighboring gene TBC1 domain family, member 16 Neighboring gene uncharacterized LOC116735299 Neighboring gene meteorin-like protein Neighboring gene chromobox homolog 8a (Pc class homolog, Drosophila)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045687.1 Chromosome 16 Reference Xiphophorus_hellerii-4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 SUMO-protein ligase CBX4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus hellerii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xiphophorus_hellerii-4.1 Primary Assembly

Genomic

  1. NC_045687.1 Reference Xiphophorus_hellerii-4.1 Primary Assembly

    Range
    13717932..13727435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032587074.1 → XP_032442965.1  E3 SUMO-protein ligase CBX4-like isoform X2

    Conserved Domains (2) summary
    cd18645
    Location:8 → 62
    CD_Cbx4; chromodomain of chromobox homolog 4
    pfam17218
    Location:507 → 529
    CBX7_C; CBX family C-terminal motif

  2. XM_032587073.1 → XP_032442964.1  E3 SUMO-protein ligase CBX4-like isoform X1

    Conserved Domains (2) summary
    cd18645
    Location:8 → 62
    CD_Cbx4; chromodomain of chromobox homolog 4
    pfam17218
    Location:524 → 546
    CBX7_C; CBX family C-terminal motif
Nucleotide Protein Strain
Heading Accession and Version

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