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GINM1 glycoprotein integral membrane 1 [ Homo sapiens (human) ]

Gene ID: 116254, updated on 12-Oct-2019

Summary

Official Symbol
GINM1provided by HGNC
Official Full Name
glycoprotein integral membrane 1provided by HGNC
Primary source
HGNC:HGNC:21074
See related
Ensembl:ENSG00000055211
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf72
Expression
Ubiquitous expression in thyroid (RPKM 51.1), kidney (RPKM 49.2) and 25 other tissues See more
Orthologs

Genomic context

See GINM1 in Genome Data Viewer
Location:
6q25.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (149566375..149591748)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (149887528..149912067)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 59 pseudogene Neighboring gene peptidylprolyl isomerase like 4 Neighboring gene RNA, U7 small nuclear 3 pseudogene Neighboring gene ribosomal protein S18 pseudogene 9 Neighboring gene katanin catalytic subunit A1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • dJ12G14.2

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
glycoprotein integral membrane protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138785.5NP_620140.1  glycoprotein integral membrane protein 1 precursor

    See identical proteins and their annotated locations for NP_620140.1

    Status: VALIDATED

    Source sequence(s)
    AA903253, AI245018, AL078581, BC014320, BU621398, HY049714
    Consensus CDS
    CCDS5216.1
    UniProtKB/Swiss-Prot
    Q9NU53
    Related
    ENSP00000356389.5, ENST00000367419.10

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    149566375..149591748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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