GINM1 glycoprotein integral membrane 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: GINM1provided by HGNC
Official Full Name: glycoprotein integral membrane 1provided by HGNC
Primary source: HGNC:HGNC:21074
See related: Ensembl:ENSG00000055211
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: C6orf72
Expression: Ubiquitous expression in thyroid (RPKM 51.1), kidney (RPKM 49.2) and 25 other tissues See more
Orthologs: mouse all

Genomic context

Location:: 6q25.1

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
109.20200522	current	GRCh38.p13 (GCF_000001405.39)	6	NC_000006.12 (149566375..149591748)
105	previous assembly	GRCh37.p13 (GCF_000001405.25)	6	NC_000006.11 (149887528..149912067)

Chromosome 6 - NC_000006.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

PMC156606P1 (e-PCR)
- UniSTS:271408

RH46830 (e-PCR)
- UniSTS:67416

L18426 (e-PCR)
- UniSTS:34648

A008Y20 (e-PCR)
- UniSTS:47739

Homology

Homologs of the GINM1 gene: The GINM1 gene is conserved in chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, and zebrafish.
Orthologs from Annotation Pipeline: 314 organisms have orthologs with human gene GINM1
Orthologs

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
protein binding	IPI Inferred from Physical Interaction more info	PubMed

Component	Evidence Code	Pubs
integral component of membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: glycoprotein integral membrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.