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acod1 aconitate decarboxylase 1 [ Sparus aurata (gilthead seabream) ]

Gene ID: 115588450, updated on 17-Mar-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
Ensembl:ENSSAUG00010008184
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 9 NC_044195.1 (13022530..13025879)

Chromosome 9 - NC_044195.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115587540 Neighboring gene potassium channel tetramerisation domain containing 12.1 Neighboring gene uncharacterized LOC115588452 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene F-box and leucine-rich repeat protein 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044195.1 Chromosome 9 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044195.1 Reference fSpaAur1.1 Primary Assembly

    Range
    13022530..13025879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030429061.1 → XP_030284921.1  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A671UUG3, A0A671UVY3
    Related
    ENSSAUP00010018093.1, ENSSAUT00010019115.1
    Conserved Domains (1) summary
    pfam03972
    Location:14 → 429
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
Heading Accession and Version

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