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meltf melanotransferrin [ Gadus morhua (Atlantic cod) ]

Gene ID: 115556380, updated on 17-Mar-2024

Summary

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Gene symbol
meltf
Gene description
melanotransferrin
See related
Ensembl:ENSGMOG00000018637
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
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Genomic context

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See meltf in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 12 NC_044059.1 (29261183..29270585, complement)

Chromosome 12 - NC_044059.1Genomic Context describing neighboring genes Neighboring gene NCBP2 antisense 2 (head to head) Neighboring gene FKBP prolyl isomerase 2 Neighboring gene discs large homolog 1-like protein Neighboring gene vegetative cell wall protein gp1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044059.1 Chromosome 12 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in iron ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
melanotransferrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044059.1 Reference gadMor3.0 Primary Assembly

    Range
    29261183..29270585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030373606.1 → XP_030229466.1  melanotransferrin isoform X1

    UniProtKB/TrEMBL
    A0A8C5BXL8
    Conserved Domains (1) summary
    smart00094
    Location:359 → 688
    TR_FER; Transferrin

  2. XM_030373607.1 → XP_030229467.1  melanotransferrin isoform X2

    UniProtKB/TrEMBL
    A0A8C5AXZ3, A0A8C5BXL8
    Related
    ENSGMOP00000037941.1, ENSGMOT00000029562.1
    Conserved Domains (1) summary
    smart00094
    Location:358 → 687
    TR_FER; Transferrin
Nucleotide Protein
Heading Accession and Version

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