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LOC115537321 arachidonate 15-lipoxygenase B-like [ Gadus morhua (Atlantic cod) ]

Gene ID: 115537321, updated on 23-Oct-2023

Summary

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Gene symbol
LOC115537321
Gene description
arachidonate 15-lipoxygenase B-like
See related
Ensembl:ENSGMOG00000017186
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
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Genomic context

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See LOC115537321 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 23 NC_044070.1 (7612687..7632124, complement)

Chromosome 23 - NC_044070.1Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain-containing protein 2-like Neighboring gene zinc finger protein 239-like Neighboring gene tigger transposable element-derived protein 6-like Neighboring gene Rho GTPase activating protein 21 Neighboring gene phosphoribosyltransferase domain-containing protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044070.1 Chromosome 23 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arachidonate 15-lipoxygenase B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044070.1 Reference gadMor3.0 Primary Assembly

    Range
    7612687..7632124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030349153.1 → XP_030205013.1  arachidonate 15-lipoxygenase B-like

    UniProtKB/TrEMBL
    A0A8C4ZNC8, A0A8C5AC05
    Related
    ENSGMOP00000029974.1, ENSGMOT00000038903.1
    Conserved Domains (2) summary
    pfam00305
    Location:223 → 656
    Lipoxygenase
    cl00011
    Location:2 → 112
    PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases