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acod1 aconitate decarboxylase 1 [ Gadus morhua (Atlantic cod) ]

Gene ID: 115532896, updated on 17-Mar-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
Ensembl:ENSGMOG00000035641
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 20 NC_044067.1 (15792913..15796249, complement)

Chromosome 20 - NC_044067.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 3a Neighboring gene CLN5 intracellular trafficking protein Neighboring gene type 1 glutamine amidotransferase Neighboring gene uncharacterized LOC115533531 Neighboring gene potassium channel tetramerisation domain containing 12.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044067.1 Chromosome 20 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044067.1 Reference gadMor3.0 Primary Assembly

    Range
    15792913..15796249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030342921.1 → XP_030198781.1  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A8C5CRX0
    Related
    ENSGMOP00000062256.1, ENSGMOT00000049809.1
    Conserved Domains (1) summary
    pfam03972
    Location:14 → 443
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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