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smpd1 sphingomyelin phosphodiesterase 1 [ Salmo trutta (river trout) ]

Gene ID: 115204681, updated on 17-Mar-2024

Summary

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Gene symbol
smpd1
Gene description
sphingomyelin phosphodiesterase 1
See related
Ensembl:ENSSTUG00000017095
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See smpd1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 12 NC_042968.1 (94941264..94956519, complement)

Chromosome 12 - NC_042968.1Genomic Context describing neighboring genes Neighboring gene thrombospondin type 1 domain containing 1 Neighboring gene uncharacterized LOC115204680 Neighboring gene transmembrane phosphatase with tensin homology Neighboring gene uncharacterized LOC115204682 Neighboring gene CD96 molecule Neighboring gene protocadherin Fat 3-like Neighboring gene transfer RNA glutamic acid (anticodon UUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042968.1 Chromosome 12 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042968.1 Reference fSalTru1.1 Primary Assembly

    Range
    94941264..94956519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029770402.1 → XP_029626262.1  sphingomyelin phosphodiesterase

    UniProtKB/TrEMBL
    A0A673Z0G2, A0A673Z0U4
    Related
    ENSSTUP00000040200.1, ENSSTUT00000042022.1
    Conserved Domains (2) summary
    smart00741
    Location:56 → 129
    SapB; Saposin (B) Domains
    cd00842
    Location:170 → 465
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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