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b4galnt3b beta-1,4-N-acetyl-galactosaminyl transferase 3b [ Salmo trutta (river trout) ]

Gene ID: 115196693, updated on 17-Mar-2024

Summary

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Gene symbol
b4galnt3b
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 3b
See related
Ensembl:ENSSTUG00000029346
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See b4galnt3b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 7 NC_042963.1 (42158..76429, complement)

Chromosome 7 - NC_042963.1Genomic Context describing neighboring genes Neighboring gene troponin I, skeletal, slow c Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP4-like Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 Neighboring gene WASH complex subunit 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042963.1 Chromosome 7 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042963.1 Reference fSalTru1.1 Primary Assembly

    Range
    42158..76429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029757530.1 → XP_029613390.1  beta-1,4-N-acetylgalactosaminyltransferase 3-like isoform X2

    UniProtKB/TrEMBL
    A0A674BB48
    Related
    ENSSTUP00000068659.1, ENSSTUT00000072865.1

  2. XM_029757529.1 → XP_029613389.1  beta-1,4-N-acetylgalactosaminyltransferase 3-like isoform X1

    UniProtKB/TrEMBL
    A0A674BB48
    Conserved Domains (3) summary
    PHA03247
    Location:499 → 661
    PHA03247; large tegument protein UL36; Provisional
    cl08459
    Location:137 → 261
    PA14; PA14 domain
    cl11394
    Location:843 → 1136
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases