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macrod1 mono-ADP ribosylhydrolase 1 [ Salmo trutta (river trout) ]

Gene ID: 115168660, updated on 12-Sep-2024

Summary

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Gene symbol
macrod1
Gene description
mono-ADP ribosylhydrolase 1
See related
Ensembl:ENSSTUG00000004983
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See macrod1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 3 NC_042959.1 (13852527..13957477)

Chromosome 3 - NC_042959.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain-containing protein 3-like Neighboring gene fermitin family homolog 3-like Neighboring gene uncharacterized LOC115168651 Neighboring gene leucine-rich repeat transmembrane protein FLRT1-like Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene uncharacterized LOC115168671 Neighboring gene coiled-coil domain containing 88B Neighboring gene RDS/peripherin-like protein xRDS35

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042959.1 Chromosome 3 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP-ribosylglutamate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-glutamate ADP-deribosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in purine nucleoside metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribose glycohydrolase MACROD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042959.1 Reference fSalTru1.1 Primary Assembly

    Range
    13852527..13957477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029724143.1 → XP_029580003.1  ADP-ribose glycohydrolase MACROD1 isoform X2

    UniProtKB/TrEMBL
    A0A673WF07
    Related
    ENSSTUP00000010510.1, ENSSTUT00000011183.1
    Conserved Domains (1) summary
    PRK00431
    Location:212 → 377
    PRK00431; ADP-ribose-binding protein

  2. XM_029724133.1 → XP_029579993.1  ADP-ribose glycohydrolase MACROD1 isoform X1

    UniProtKB/TrEMBL
    A0A673WN33
    Related
    ENSSTUP00000010533.1, ENSSTUT00000011205.1
    Conserved Domains (1) summary
    PRK00431
    Location:212 → 377
    PRK00431; ADP-ribose-binding protein
Nucleotide Protein
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