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sarm1 sterile alpha and TIR motif containing 1 [ Salmo trutta (river trout) ]

Gene ID: 115163334, updated on 17-Mar-2024

Summary

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Gene symbol
sarm1
Gene description
sterile alpha and TIR motif containing 1
See related
Ensembl:ENSSTUG00000022033
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See sarm1 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 26 NC_042982.1 (19370219..19383414)

Chromosome 26 - NC_042982.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115163337 Neighboring gene vitronectin a Neighboring gene solute carrier family 13 member 2-like Neighboring gene forkhead box protein N1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042982.1 Chromosome 26 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MyD88-independent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to axon injury IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterile alpha and TIR motif-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042982.1 Reference fSalTru1.1 Primary Assembly

    Range
    19370219..19383414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029715128.1 → XP_029570988.1  sterile alpha and TIR motif-containing protein 1-like

    UniProtKB/TrEMBL
    A0A673ZXP1, A0A674ED01
    Related
    ENSSTUP00000052124.1, ENSSTUT00000054503.1
    Conserved Domains (3) summary
    cd09501
    Location:412 → 480
    SAM_SARM1-like_repeat1; SAM domain ot SARM1-like proteins, repeat 1
    cd09502
    Location:481 → 548
    SAM_SARM1-like_repeat2; SAM domain of SARM1-like, repeat 2
    smart00255
    Location:561 → 698
    TIR; Toll - interleukin 1 - resistance
Nucleotide Protein
Heading Accession and Version

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