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acod1 aconitate decarboxylase 1 [ Salmo trutta (river trout) ]

Gene ID: 115156248, updated on 17-Mar-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
Ensembl:ENSSTUG00000026143
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 20 NC_042976.1 (54637444..54642780)

Chromosome 20 - NC_042976.1Genomic Context describing neighboring genes Neighboring gene LIM domain only protein 7-like Neighboring gene potassium channel tetramerisation domain containing 12.1 Neighboring gene CLN5 intracellular trafficking protein Neighboring gene F-box and leucine-rich repeat protein 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042976.1 Chromosome 20 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042976.1 Reference fSalTru1.1 Primary Assembly

    Range
    54637444..54642780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029703691.1 → XP_029559551.1  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A674ALZ4
    Related
    ENSSTUP00000060449.1, ENSSTUT00000063723.1
    Conserved Domains (1) summary
    pfam03972
    Location:14 → 439
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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