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b4galnt3b beta-1,4-N-acetyl-galactosaminyl transferase 3b [ Echeneis naucrates (live sharksucker) ]

Gene ID: 115056211, updated on 17-Mar-2024

Summary

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Gene symbol
b4galnt3b
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 3b
See related
Ensembl:ENSENLG00000013914
Gene type
protein coding
RefSeq status
MODEL
Organism
Echeneis naucrates
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis
Orthologs
zebrafish all
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Genomic context

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See b4galnt3b in Genome Data Viewer
Location:
chromosome: 16
Exon count:
20
Annotation release Status Assembly Chr Location
100 current fEcheNa1.1 (GCF_900963305.1) 16 NC_042526.1 (11651999..11672333, complement)

Chromosome 16 - NC_042526.1Genomic Context describing neighboring genes Neighboring gene lipase maturation factor 2a Neighboring gene C2 calcium dependent domain containing 5 Neighboring gene FKBP prolyl isomerase 4 Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042526.1 Chromosome 16 Reference fEcheNa1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echeneis naucrates Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEcheNa1.1 Primary Assembly

Genomic

  1. NC_042526.1 Reference fEcheNa1.1 Primary Assembly

    Range
    11651999..11672333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029522484.1 → XP_029378344.1  beta-1,4-N-acetylgalactosaminyltransferase 3-like

    UniProtKB/TrEMBL
    A0A665VIR9, A0A665VJ02
    Related
    ENSENLP00000031640.1, ENSENLT00000032550.1
    Conserved Domains (2) summary
    cl08459
    Location:108 → 242
    PA14; PA14 domain
    cl11394
    Location:787 → 1086
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases