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TSGA13 testis specific 13 [ Homo sapiens (human) ]

Gene ID: 114960, updated on 21-Dec-2019

Summary

Official Symbol
TSGA13provided by HGNC
Official Full Name
testis specific 13provided by HGNC
Primary source
HGNC:HGNC:12369
See related
Ensembl:ENSG00000213265
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 4.0), ovary (RPKM 0.4) and 4 other tissues See more
Orthologs

Genomic context

See TSGA13 in Genome Data Viewer
Location:
7q32.2
Exon count:
9
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (130668643..130687432, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (130353486..130372268, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene COPI coat complex subunit gamma 2 Neighboring gene COPG2 imprinted transcript 1 Neighboring gene RNA, 5S ribosomal pseudogene 246 Neighboring gene uncharacterized LOC105375508 Neighboring gene Kruppel like factor 14 Neighboring gene uncharacterized LOC105375509 Neighboring gene armadillo repeat containing X-linked 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
testis-specific gene 13 protein
Names
testis-specific A13

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304968.1NP_001291897.1  testis-specific gene 13 protein

    See identical proteins and their annotated locations for NP_001291897.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC234644, AK093329, BC038415
    Consensus CDS
    CCDS5824.1
    UniProtKB/Swiss-Prot
    Q96PP4
    UniProtKB/TrEMBL
    A0A024R769
    Related
    ENSP00000406047.1, ENST00000456951.5
    Conserved Domains (1) summary
    pfam14994
    Location:3273
    TSGA13; Testis-specific gene 13 protein
  2. NM_052933.4NP_443165.1  testis-specific gene 13 protein

    See identical proteins and their annotated locations for NP_443165.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC234644, AF431815, AK093329, BC038415
    Consensus CDS
    CCDS5824.1
    UniProtKB/Swiss-Prot
    Q96PP4
    UniProtKB/TrEMBL
    A0A024R769
    Related
    ENSP00000348996.3, ENST00000356588.7
    Conserved Domains (1) summary
    pfam14994
    Location:3273
    TSGA13; Testis-specific gene 13 protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    130668643..130687432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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