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C1QTNF7 C1q and TNF related 7 [ Homo sapiens (human) ]

Gene ID: 114905, updated on 5-Aug-2022

Summary

Official Symbol
C1QTNF7provided by HGNC
Official Full Name
C1q and TNF related 7provided by HGNC
Primary source
HGNC:HGNC:14342
See related
Ensembl:ENSG00000163145 AllianceGenome:HGNC:14342
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTRP7; ZACRP7
Summary
Predicted to enable identical protein binding activity. Predicted to be located in extracellular space. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in endometrium (RPKM 7.0), gall bladder (RPKM 5.4) and 20 other tissues See more
Orthologs
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Genomic context

See C1QTNF7 in Genome Data Viewer
Location:
4p15.32
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (15339786..15446167)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (15321658..15428083)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (15341612..15447791)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene C1QTNF7 antisense RNA 1 Neighboring gene uncharacterized LOC124900673 Neighboring gene RN7SK pseudogene 170 Neighboring gene uncharacterized LOC107986185 Neighboring gene uncharacterized LOC124900672 Neighboring gene coiled-coil and C2 domain containing 2A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
EBI GWAS Catalog
Genome-wide association study of conduct disorder symptomatology.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
complement C1q tumor necrosis factor-related protein 7
Names
C1q and tumor necrosis factor related protein 7
complement-c1q tumor necrosis factor-related protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135170.2NP_001128642.1  complement C1q tumor necrosis factor-related protein 7 isoform a precursor

    See identical proteins and their annotated locations for NP_001128642.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC007016, BC022187, BE856929, BX647781
    Consensus CDS
    CCDS47025.1
    UniProtKB/Swiss-Prot
    Q9BXJ2
    Related
    ENSP00000295297.4, ENST00000295297.4
    Conserved Domains (2) summary
    pfam01391
    Location:78144
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00386
    Location:156280
    C1q; C1q domain
  2. NM_001135171.2NP_001128643.1  complement C1q tumor necrosis factor-related protein 7 isoform b precursor

    See identical proteins and their annotated locations for NP_001128643.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and uses a downstream translation initiation codon, compared to variant 1, resulting in an isoform (b) with a shorter N-terminus, compared to isoform a. Both variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AC007016, AC099550, BE856929, DB069980
    Consensus CDS
    CCDS3414.1
    UniProtKB/Swiss-Prot
    J3KPW3, Q9BXJ2
    Related
    ENSP00000410722.1, ENST00000429690.5
    Conserved Domains (2) summary
    pfam00386
    Location:149273
    C1q; C1q domain
    pfam01391
    Location:59108
    Collagen; Collagen triple helix repeat (20 copies)
  3. NM_031911.5NP_114117.1  complement C1q tumor necrosis factor-related protein 7 isoform b precursor

    See identical proteins and their annotated locations for NP_114117.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and uses a downstream translation initiation codon, compared to variant 1, resulting in an isoform (b) with a shorter N-terminus, compared to isoform a. Both variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AC007016, AF329839, BE856929, DB290077
    Consensus CDS
    CCDS3414.1
    UniProtKB/Swiss-Prot
    J3KPW3, Q9BXJ2
    Related
    ENSP00000388914.2, ENST00000444304.3
    Conserved Domains (2) summary
    pfam00386
    Location:149273
    C1q; C1q domain
    pfam01391
    Location:59108
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    15339786..15446167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011513772.2XP_011512074.1  complement C1q tumor necrosis factor-related protein 7 isoform X1

    See identical proteins and their annotated locations for XP_011512074.1

    UniProtKB/Swiss-Prot
    Q9BXJ2
    Conserved Domains (2) summary
    pfam01391
    Location:78144
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00386
    Location:156280
    C1q; C1q domain
  2. XM_047449566.1XP_047305522.1  complement C1q tumor necrosis factor-related protein 7 isoform X2

    UniProtKB/Swiss-Prot
    J3KPW3
  3. XM_011513773.2XP_011512075.1  complement C1q tumor necrosis factor-related protein 7 isoform X2

    See identical proteins and their annotated locations for XP_011512075.1

    UniProtKB/Swiss-Prot
    J3KPW3, Q9BXJ2
    Conserved Domains (2) summary
    pfam00386
    Location:149273
    C1q; C1q domain
    pfam01391
    Location:59108
    Collagen; Collagen triple helix repeat (20 copies)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    15321658..15428083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)