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CSPG4P1Y CSPG4 pseudogene 1 Y-linked [ Homo sapiens (human) ]

Gene ID: 114758, updated on 25-Jan-2022

Summary

Official Symbol
CSPG4P1Yprovided by HGNC
Official Full Name
CSPG4 pseudogene 1 Y-linkedprovided by HGNC
Primary source
HGNC:HGNC:16478
See related
Ensembl:ENSG00000240450 MIM:400034; AllianceGenome:HGNC:16478
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CSPG4LY; CSPG4P1; CSPG4PY1; CSPG4LYP1
Summary
There are two copies of this pseudogene within the P1 palindrome on chromosome Y. This record represents the more telomeric copy. [provided by RefSeq, Jul 2008]
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Genomic context

See CSPG4P1Y in Genome Data Viewer
Location:
Yq11.23
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) Y NC_000024.10 (25482908..25486705)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (27629055..27632852)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene GOLGA2 pseudogene 3 Y-linked Neighboring gene RNA, 7SL, cytoplasmic 725, pseudogene Neighboring gene CHRFAM7A pseudogene 1 Neighboring gene CSPG4 pseudogene 4 Y-linked Neighboring gene dynamin 1 pseudogene 48 Neighboring gene dynamin 1 pseudogene 26 Neighboring gene golgin A6 family like 14, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked
  • chondroitin sulfate proteoglycan 4 pseudogene, Y-linked 1
  • chondroitin sulfate proteoglycan 4-like, Y-linked pseudogene 1

Clone Names

  • AC006328.6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004755.2 

    Range
    3672022..3675819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_001554.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006328
    Related
    ENST00000306641.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p13 Primary Assembly

    Range
    25482908..25486705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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