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Rpl31 ribosomal protein L31 [ Mus musculus (house mouse) ]

Gene ID: 114641, updated on 12-Aug-2019

Summary

Official Symbol
Rpl31provided by MGI
Official Full Name
ribosomal protein L31provided by MGI
Primary source
MGI:MGI:2149632
See related
Ensembl:ENSMUSG00000073702
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dts
Expression
Broad expression in liver E14 (RPKM 213.5), bladder adult (RPKM 185.2) and 24 other tissues See more
Orthologs

Genomic context

See Rpl31 in Genome Data Viewer
Location:
1; 1 B
Exon count:
5
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (39367851..39371911)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (39424696..39428756)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene neuronal PAS domain protein 2 Neighboring gene microrchidia 2A pseudogene Neighboring gene ribosomal protein L17 pseudogene Neighboring gene TBC1 domain family, member 8 Neighboring gene small nucleolar RNA U3 Neighboring gene CCR4-NOT transcription complex, subunit 11

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Spontaneous (2) 

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC106651, MGC107628

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasmic translation ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
polysomal ribosome ISO
Inferred from Sequence Orthology
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
synapse EXP
Inferred from Experiment
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252218.1NP_001239147.1  60S ribosomal protein L31

    See identical proteins and their annotated locations for NP_001239147.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1-3 encode the same protein.
    Source sequence(s)
    AI607948, AK014295, BU571205, CB202955, CO805814
    Consensus CDS
    CCDS14904.1
    UniProtKB/Swiss-Prot
    P62900
    UniProtKB/TrEMBL
    Q5M9K9
    Related
    ENSMUSP00000137631.1, ENSMUST00000179954.7
    Conserved Domains (1) summary
    pfam01198
    Location:20100
    Ribosomal_L31e; Ribosomal protein L31e
  2. NM_001252219.1NP_001239148.1  60S ribosomal protein L31

    See identical proteins and their annotated locations for NP_001239148.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    AI607948, AK014295, BU571205, CO805814
    Consensus CDS
    CCDS14904.1
    UniProtKB/Swiss-Prot
    P62900
    UniProtKB/TrEMBL
    Q5M9K9
    Related
    ENSMUSP00000136354.1, ENSMUST00000178079.7
    Conserved Domains (1) summary
    pfam01198
    Location:20100
    Ribosomal_L31e; Ribosomal protein L31e
  3. NM_053257.3NP_444487.1  60S ribosomal protein L31

    See identical proteins and their annotated locations for NP_444487.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    AI607948, AK011236, CO805814
    Consensus CDS
    CCDS14904.1
    UniProtKB/Swiss-Prot
    P62900
    UniProtKB/TrEMBL
    Q5M9K9
    Related
    ENSMUSP00000083722.6, ENSMUST00000086535.11
    Conserved Domains (1) summary
    pfam01198
    Location:20100
    Ribosomal_L31e; Ribosomal protein L31e

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000067.6 Reference GRCm38.p6 C57BL/6J

    Range
    39367851..39371911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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