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D17H6S53E DNA segment, Chr 17, human D6S53E [ Mus musculus (house mouse) ]

Gene ID: 114585, updated on 26-Sep-2022

Summary

Official Symbol
D17H6S53Eprovided by MGI
Official Full Name
DNA segment, Chr 17, human D6S53Eprovided by MGI
Primary source
MGI:MGI:90673
See related
Ensembl:ENSMUSG00000043311 AllianceGenome:MGI:90673
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
G4; NG34
Summary
Orthologous to human C6orf47 (chromosome 6 open reading frame 47). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in duodenum adult (RPKM 7.6), adrenal adult (RPKM 5.9) and 28 other tissues See more
Orthologs
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Genomic context

See D17H6S53E in Genome Data Viewer
Location:
17 B1; 17 18.59 cM
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35345378..35347831)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (35126402..35128855)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 complex, locus G5B Neighboring gene casein kinase 2, beta polypeptide Neighboring gene G patch domain and ankyrin repeats 1 Neighboring gene predicted gene 20522 Neighboring gene apolipoprotein M Neighboring gene BCL2-associated athanogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C6orf47 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_033477.2NP_258438.1  uncharacterized protein C6orf47 homolog

    See identical proteins and their annotated locations for NP_258438.1

    Status: VALIDATED

    Source sequence(s)
    CR974444
    Consensus CDS
    CCDS28686.1
    UniProtKB/Swiss-Prot
    Q9Z1R4
    UniProtKB/TrEMBL
    B2RS43
    Related
    ENSMUSP00000061264.6, ENSMUST00000061859.7
    Conserved Domains (1) summary
    pfam15576
    Location:16264
    DUF4661; Domain of unknown function (DUF4661)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    35345378..35347831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)