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LOC11446816 chitinase-like protein 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11446816, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11446816
Gene description
chitinase-like protein 1
Locus tag
MtrunA17_Chr7g0221751
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11446816 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (7325908..7329641, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (6893485..6897218, complement)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11445843 Neighboring gene F-box/LRR-repeat protein At3g26922 Neighboring gene CRIB domain-containing protein RIC4 Neighboring gene probable aldo-keto reductase 2 Neighboring gene IN2-2 protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase-like protein 1
Names
Nodule Cysteine-Rich (NCR) secreted peptide
putative glycoside hydrolase, family 19, Lysozyme-like domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    7325908..7329641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003621632.3 → XP_003621680.1  chitinase-like protein 1

    See identical proteins and their annotated locations for XP_003621680.1

    UniProtKB/TrEMBL
    A2Q575
    Conserved Domains (1) summary
    cd00325
    Location:64 → 304
    chitinase_glyco_hydro_19; Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some ...
Nucleotide Protein
Heading Accession and Version

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