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LOC11435521 DNA damage-binding protein 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11435521, updated on 7-Dec-2023

Summary

Gene symbol
LOC11435521
Gene description
DNA damage-binding protein 1
Locus tag
MtrunA17_Chr8g0381071
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

See LOC11435521 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (41221315..41232771, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (37142395..37153842, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene cationic amino acid transporter 1 Neighboring gene protein WHAT'S THIS FACTOR 9, mitochondrial Neighboring gene glucan endo-1,3-beta-glucosidase 13 Neighboring gene protein kinase PINOID

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
DNA damage-binding protein 1
Names
damaged DNA-binding protein 1A
putative transcription factor WD40-like family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    41221315..41232771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003629971.4XP_003630019.2  DNA damage-binding protein 1

    UniProtKB/TrEMBL
    A0A0C3Y5F2, G7L9M1
    Conserved Domains (2) summary
    pfam03178
    Location:7451058
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:76537
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term