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LOC11421654 transcription factor bHLH48 [ Medicago truncatula (barrel medic) ]

Gene ID: 11421654, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11421654
Gene description
transcription factor bHLH48
Locus tag
MtrunA17_Chr7g0258161
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11421654 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (43531986..43538897, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (36665768..36672698, complement)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene exo-poly-alpha-D-galacturonosidase Neighboring gene tRNA-splicing endonuclease subunit Sen2-1 Neighboring gene protein cornichon homolog 1 Neighboring gene transcription factor bHLH130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH48
Names
putative transcription factor bHLH family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    43531986..43538897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003625148.4 → XP_003625196.1  transcription factor bHLH48

    See identical proteins and their annotated locations for XP_003625196.1

    UniProtKB/TrEMBL
    A2Q3E9
    Conserved Domains (1) summary
    smart00353
    Location:185 → 234
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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