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ssbp1 single-stranded DNA binding protein 1 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114160943, updated on 15-Mar-2024

Summary

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Gene symbol
ssbp1
Gene description
single-stranded DNA binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See ssbp1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 17 NC_040244.1 (6979128..6984730, complement)

Chromosome 17 - NC_040244.1Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase, iota Neighboring gene cAMP responsive element binding protein 3-like 2 Neighboring gene laminin subunit beta-1-like Neighboring gene uncharacterized LOC114160833

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040244.1 Chromosome 17 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial nucleoid IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA-binding protein, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040244.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    6979128..6984730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028043893.1 → XP_027899694.1  single-stranded DNA-binding protein, mitochondrial

    UniProtKB/TrEMBL
    A0A3B5M623
    Conserved Domains (1) summary
    cl09930
    Location:26 → 140
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

  2. XM_028043894.1 → XP_027899695.1  single-stranded DNA-binding protein, mitochondrial

    UniProtKB/TrEMBL
    A0A3B5M623
    Conserved Domains (1) summary
    cl09930
    Location:26 → 140
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
Nucleotide Protein
Heading Accession and Version

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