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rnaseh1 ribonuclease H1 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114158974, updated on 15-Mar-2024

Summary

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Gene symbol
rnaseh1
Gene description
ribonuclease H1
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See rnaseh1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 15 NC_040242.1 (4993015..4998358)

Chromosome 15 - NC_040242.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114158988 Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene ribosomal protein S7 Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene myelin transcription factor 1-like, a Neighboring gene E2F transcription factor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040242.1 Chromosome 15 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication, removal of RNA primer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribonuclease H1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040242.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    4993015..4998358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028040963.1 → XP_027896764.1  ribonuclease H1

    Conserved Domains (2) summary
    cd09280
    Location:150 → 291
    RNase_HI_eukaryote_like; Eukaryotic RNase H is essential and is longer and more complex than their prokaryotic counterparts
    pfam01693
    Location:29 → 71
    Cauli_VI; Caulimovirus viroplasmin

RNA

  1. XR_003598514.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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