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LOC114152867 transcriptional regulator ATRX-like [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114152867, updated on 21-Dec-2023

Summary

Gene symbol
LOC114152867
Gene description
transcriptional regulator ATRX-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

See LOC114152867 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
35
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 11 NC_040238.1 (20495554..20518477, complement)

Chromosome 11 - NC_040238.1Genomic Context describing neighboring genes Neighboring gene potassium channel subfamily K member 13-like Neighboring gene coiled-coil domain containing 61 Neighboring gene plastin 3 (T isoform) Neighboring gene cyclic nucleotide gated channel subunit alpha 2b

Genomic regions, transcripts, and products

Genomic Sequence:
NC_040238.1 Chromosome 11 Reference X_couchianus-1.0 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
transcriptional regulator ATRX-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040238.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    20495554..20518477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028030970.1XP_027886771.1  transcriptional regulator ATRX-like

    Conserved Domains (4) summary
    COG0553
    Location:10761685
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd11726
    Location:155256
    ADDz_ATRX; ADDz domain found in ATRX (alpha-thalassemia/mental retardation, X-linked)
    cl02554
    Location:256319
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
    cl28899
    Location:10931335
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily