U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC114149470 nipped-B-like protein B [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114149470, updated on 14-Nov-2024

Summary

Go to the top of the page Help
Gene symbol
LOC114149470
Gene description
nipped-B-like protein B
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC114149470 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
48
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 8 NC_040235.1 (15558882..15588928, complement)

Chromosome 8 - NC_040235.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 8a Neighboring gene rhodopsin-like Neighboring gene nucleoporin 155 Neighboring gene KIAA2026 ortholog Neighboring gene melan-A Neighboring gene ubiquitin like with PHD and ring finger domains 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_040235.1 Chromosome 8 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in digestive tract development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic viscerocranium morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of protein localization to chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication-born double-strand break repair via sister chromatid exchange IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Scc2-Scc4 cohesin loading complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nipped-B-like protein B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040235.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    15558882..15588928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028025372.1 → XP_027881173.1  nipped-B-like protein B isoform X1

    UniProtKB/TrEMBL
    A0A3B5KZ75
    Conserved Domains (3) summary
    PTZ00121
    Location:532 → 973
    PTZ00121; MAEBL; Provisional
    pfam12765
    Location:1802 → 1843
    Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
    pfam12830
    Location:2288 → 2461
    Nipped-B_C; Sister chromatid cohesion C-terminus

  2. XM_028025373.1 → XP_027881174.1  nipped-B-like protein B isoform X2

    UniProtKB/TrEMBL
    A0A3B5KZ75
    Conserved Domains (3) summary
    PTZ00121
    Location:469 → 910
    PTZ00121; MAEBL; Provisional
    pfam12765
    Location:1739 → 1780
    Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
    pfam12830
    Location:2225 → 2398
    Nipped-B_C; Sister chromatid cohesion C-terminus

  3. XM_028025371.1 → XP_027881172.1  nipped-B-like protein B isoform X1

    UniProtKB/TrEMBL
    A0A3B5KZ75
    Conserved Domains (3) summary
    PTZ00121
    Location:532 → 973
    PTZ00121; MAEBL; Provisional
    pfam12765
    Location:1802 → 1843
    Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
    pfam12830
    Location:2288 → 2461
    Nipped-B_C; Sister chromatid cohesion C-terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases