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e2f5 E2F transcription factor 5 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114146937, updated on 15-Mar-2024

Summary

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Gene symbol
e2f5
Gene description
E2F transcription factor 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See e2f5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 6 NC_040233.1 (19973243..19983154, complement)

Chromosome 6 - NC_040233.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114145848 Neighboring gene atypical chemokine receptor 4a Neighboring gene leucine rich repeat and coiled-coil centrosomal protein 1 Neighboring gene RNA-binding Raly-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040233.1 Chromosome 6 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor E2F5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040233.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    19973243..19983154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028021396.1 → XP_027877197.1  transcription factor E2F5-like

    Conserved Domains (2) summary
    cd14660
    Location:101 → 205
    E2F_DD; Dimerization domain of E2F transcription factors
    pfam02319
    Location:24 → 89
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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