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lig1 ligase I, DNA, ATP-dependent [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114145805, updated on 15-Mar-2024

Summary

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Gene symbol
lig1
Gene description
ligase I, DNA, ATP-dependent
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See lig1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
27
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 6 NC_040233.1 (24609339..24682357, complement)

Chromosome 6 - NC_040233.1Genomic Context describing neighboring genes Neighboring gene ATPase Na+/K+ transporting subunit alpha 2a Neighboring gene myelin protein zero Neighboring gene ETS translocation variant 3-like protein Neighboring gene phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1a Neighboring gene dynein axonemal assembly factor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040233.1 Chromosome 6 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Okazaki fragment processing involved in mitotic DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040233.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    24609339..24682357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028019423.1 → XP_027875224.1  DNA ligase 1

    Conserved Domains (2) summary
    PTZ00121
    Location:14 → 399
    PTZ00121; MAEBL; Provisional
    PLN03113
    Location:271 → 1010
    PLN03113; DNA ligase 1; Provisional
Nucleotide Protein
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