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pola2 polymerase (DNA directed), alpha 2 [ Xiphophorus couchianus (Monterrey platyfish) ]

Gene ID: 114139671, updated on 15-Mar-2024

Summary

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Gene symbol
pola2
Gene description
polymerase (DNA directed), alpha 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus couchianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See pola2 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
18
Annotation release Status Assembly Chr Location
101 current X_couchianus-1.0 (GCF_001444195.1) 23 NC_040250.1 (13784171..13790945, complement)

Chromosome 23 - NC_040250.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type containing 24 Neighboring gene myb-like protein X Neighboring gene thiosulfate:glutathione sulfurtransferase-like Neighboring gene DUF4554 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040250.1 Chromosome 23 Reference X_couchianus-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA replication initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of alpha DNA polymerase:primase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA polymerase alpha subunit B
Names
DNA polymerase alpha 2, accessory subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_couchianus-1.0 Primary Assembly

Genomic

  1. NC_040250.1 Reference X_couchianus-1.0 Primary Assembly

    Range
    13784171..13790945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028009716.1 → XP_027865517.1  DNA polymerase alpha subunit B

    UniProtKB/TrEMBL
    A0A3B5KV36
    Conserved Domains (2) summary
    COG5214
    Location:210 → 595
    POL12; DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
    pfam08418
    Location:23 → 251
    Pol_alpha_B_N; DNA polymerase alpha subunit B N-terminal
Nucleotide Protein
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