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TRIM9 tripartite motif containing 9 [ Homo sapiens (human) ]

Gene ID: 114088, updated on 5-Sep-2021

Summary

Official Symbol
TRIM9provided by HGNC
Official Full Name
tripartite motif containing 9provided by HGNC
Primary source
HGNC:HGNC:16288
See related
Ensembl:ENSG00000100505 MIM:606555
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RNF91; SPRING
Summary
The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. Its function has not been identified. Alternate splicing of this gene generates two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
Expression
Biased expression in brain (RPKM 15.3), gall bladder (RPKM 1.4) and 1 other tissue See more
Orthologs
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Genomic context

See TRIM9 in Genome Data Viewer
Location:
14q22.1
Exon count:
16
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (50975261..51105173, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (51441984..51561823, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene PYGL intron CAGE-defined low expression enhancer Neighboring gene uncharacterized LOC105370492 Neighboring gene glycogen phosphorylase L Neighboring gene uncharacterized LOC400212 Neighboring gene thioredoxin related transmembrane protein 1 Neighboring gene long intergenic non-protein coding RNA 519

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA0282

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein domain specific binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
PubMed 
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in dendrite IDA
Inferred from Direct Assay
more info
PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
E3 ubiquitin-protein ligase TRIM9
Names
RING finger protein 91
RING-type E3 ubiquitin transferase TRIM9
SNAP-25-interacting RING finger protein
homolog of rat RING finger Spring
tripartite motif-containing protein 9
NP_001374289.1
NP_001374290.1
NP_001374291.1
NP_001374292.1
NP_001374293.1
NP_001374294.1
NP_001374295.1
NP_001374296.1
NP_001374297.1
NP_001374298.1
NP_001374299.1
NP_001374300.1
NP_001374301.1
NP_001374302.1
NP_001374303.1
NP_001374304.1
NP_001374305.1
NP_001374306.1
NP_001374307.1
NP_001374308.1
NP_001374309.1
NP_055978.4
NP_443210.1
XP_005267358.1
XP_005267359.1
XP_006720081.1
XP_011534691.1
XP_016876432.1
XP_016876433.1
XP_016876434.1
XP_016876435.1
XP_016876436.1
XP_016876437.1
XP_016876438.1
XP_016876439.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001387360.1NP_001374289.1  E3 ubiquitin-protein ligase TRIM9 isoform 3

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Related
    ENSP00000507131.1, ENST00000684578.1
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:620785
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  2. NM_001387361.1NP_001374290.1  E3 ubiquitin-protein ligase TRIM9 isoform 4

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:449528
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:616781
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  3. NM_001387362.1NP_001374291.1  E3 ubiquitin-protein ligase TRIM9 isoform 5

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:612777
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  4. NM_001387363.1NP_001374292.1  E3 ubiquitin-protein ligase TRIM9 isoform 6

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:608773
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  5. NM_001387364.1NP_001374293.1  E3 ubiquitin-protein ligase TRIM9 isoform 7

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:606771
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  6. NM_001387365.1NP_001374294.1  E3 ubiquitin-protein ligase TRIM9 isoform 8

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:620767
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  7. NM_001387366.1NP_001374295.1  E3 ubiquitin-protein ligase TRIM9 isoform 9

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:596763
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  8. NM_001387367.1NP_001374296.1  E3 ubiquitin-protein ligase TRIM9 isoform 10

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:449528
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:592759
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  9. NM_001387368.1NP_001374297.1  E3 ubiquitin-protein ligase TRIM9 isoform 11

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:557722
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  10. NM_001387369.1NP_001374298.1  E3 ubiquitin-protein ligase TRIM9 isoform 12

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:271326
    BBC; B-Box C-terminal domain
    cd00063
    Location:380459
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:547712
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  11. NM_001387370.1NP_001374299.1  E3 ubiquitin-protein ligase TRIM9 isoform 13

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:529708
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  12. NM_001387371.1NP_001374300.1  E3 ubiquitin-protein ligase TRIM9 isoform 14

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273398
    BBC; B-Box C-terminal domain
    cd00063
    Location:452531
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:528699
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  13. NM_001387372.1NP_001374301.1  E3 ubiquitin-protein ligase TRIM9 isoform 15

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:449528
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:525696
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  14. NM_001387373.1NP_001374302.1  E3 ubiquitin-protein ligase TRIM9 isoform 16

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:529682
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  15. NM_001387374.1NP_001374303.1  E3 ubiquitin-protein ligase TRIM9 isoform 17

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (6) summary
    smart00502
    Location:271326
    BBC; B-Box C-terminal domain
    cd00063
    Location:380459
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:456609
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  16. NM_001387375.1NP_001374304.1  E3 ubiquitin-protein ligase TRIM9 isoform 18

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd12889
    Location:434601
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  17. NM_001387376.1NP_001374305.1  E3 ubiquitin-protein ligase TRIM9 isoform 19

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd12889
    Location:434583
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  18. NM_001387377.1NP_001374306.1  E3 ubiquitin-protein ligase TRIM9 isoform 20

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:449528
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:1049
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:223271
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
  19. NM_001387378.1NP_001374307.1  E3 ubiquitin-protein ligase TRIM9 isoform 21

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (5) summary
    smart00502
    Location:271326
    BBC; B-Box C-terminal domain
    cd12889
    Location:361528
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  20. NM_001387379.1NP_001374308.1  E3 ubiquitin-protein ligase TRIM9 isoform 22

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (5) summary
    smart00502
    Location:273362
    BBC; B-Box C-terminal domain
    cd00063
    Location:416495
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:1049
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:223271
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
  21. NM_001387380.1NP_001374309.1  E3 ubiquitin-protein ligase TRIM9 isoform 23

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Conserved Domains (5) summary
    smart00502
    Location:271326
    BBC; B-Box C-terminal domain
    cd00063
    Location:380459
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:1049
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl00034
    Location:223271
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
  22. NM_015163.6NP_055978.4  E3 ubiquitin-protein ligase TRIM9 isoform 1

    See identical proteins and their annotated locations for NP_055978.4

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Consensus CDS
    CCDS9703.1
    UniProtKB/Swiss-Prot
    Q9C026
    Related
    ENSP00000298355.3, ENST00000298355.7
    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:938
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd12889
    Location:529700
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
  23. NM_052978.5NP_443210.1  E3 ubiquitin-protein ligase TRIM9 isoform 2

    See identical proteins and their annotated locations for NP_443210.1

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
    Consensus CDS
    CCDS45105.1
    UniProtKB/Swiss-Prot
    Q9C026
    Related
    ENSP00000353561.4, ENST00000360392.4
    Conserved Domains (4) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl17238
    Location:552
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

RNA

  1. NR_170640.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  2. NR_170641.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  3. NR_170642.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  4. NR_170643.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  5. NR_170644.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  6. NR_170645.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  7. NR_170646.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  8. NR_170647.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  9. NR_170648.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  10. NR_170649.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  11. NR_170650.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  12. NR_170651.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770
  13. NR_170652.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL358334, AL591770

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    50975261..51105173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017020950.1XP_016876439.1  E3 ubiquitin-protein ligase TRIM9 isoform X12

    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd12889
    Location:434583
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  2. XM_017020949.1XP_016876438.1  E3 ubiquitin-protein ligase TRIM9 isoform X11

    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd12889
    Location:434601
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  3. XM_017020948.1XP_016876437.1  E3 ubiquitin-protein ligase TRIM9 isoform X10

  4. XM_017020946.1XP_016876435.1  E3 ubiquitin-protein ligase TRIM9 isoform X8

    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:449528
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:525696
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  5. XM_017020943.1XP_016876432.1  E3 ubiquitin-protein ligase TRIM9 isoform X3

    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:449528
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:616781
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  6. XM_017020947.1XP_016876436.1  E3 ubiquitin-protein ligase TRIM9 isoform X9

    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:529682
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  7. XM_017020945.1XP_016876434.1  E3 ubiquitin-protein ligase TRIM9 isoform X7

    UniProtKB/Swiss-Prot
    Q9C026
    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:938
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd12889
    Location:529700
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
  8. XM_005267302.3XP_005267359.1  E3 ubiquitin-protein ligase TRIM9 isoform X6

    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:938
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd12889
    Location:557704
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
  9. XM_017020944.1XP_016876433.1  E3 ubiquitin-protein ligase TRIM9 isoform X5

    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:557722
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  10. XM_005267301.3XP_005267358.1  E3 ubiquitin-protein ligase TRIM9 isoform X4

    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:620767
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  11. XM_006720018.3XP_006720081.1  E3 ubiquitin-protein ligase TRIM9 isoform X2

    Conserved Domains (6) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    cd00063
    Location:453532
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd12889
    Location:620785
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67
    cd16755
    Location:552
    RING-HC_TRIM9; RING finger, HC subclass, found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19826
    Location:223271
    Bbox2_TRIM9_C-I; B-box-type 2 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
    cd19843
    Location:166212
    Bbox1_TRIM9_C-I; B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
  12. XM_011536389.2XP_011534691.1  E3 ubiquitin-protein ligase TRIM9 isoform X1

    UniProtKB/Swiss-Prot
    Q9C026
    Related
    ENSP00000342970.5, ENST00000338969.9
    Conserved Domains (5) summary
    smart00502
    Location:273399
    BBC; B-Box C-terminal domain
    smart00336
    Location:224266
    BBOX; B-Box-type zinc finger
    cd00063
    Location:449528
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:938
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd12889
    Location:616773
    SPRY_PRY_TRIM67_9; PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67

RNA

  1. XR_001750136.1 RNA Sequence

  2. XR_002957528.1 RNA Sequence

  3. XR_001750135.1 RNA Sequence

  4. XR_002957527.1 RNA Sequence

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