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MCM3AP-AS1 MCM3AP antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 114044, updated on 23-Nov-2021

Summary

Official Symbol
MCM3AP-AS1provided by HGNC
Official Full Name
MCM3AP antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:16417
See related
Ensembl:ENSG00000215424
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf85; MCM3APAS; MCM3AP-AS; MCM3APASB; NCRNA00031
Expression
Ubiquitous expression in lymph node (RPKM 2.9), skin (RPKM 2.8) and 25 other tissues See more
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Genomic context

See MCM3AP-AS1 in Genome Data Viewer
Location:
21q22.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (46229231..46251701)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (47649145..47671615)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 159 Neighboring gene lanosterol synthase Neighboring gene Sharpr-MPRA regulatory region 3947 Neighboring gene minichromosome maintenance complex component 3 associated protein Neighboring gene Sharpr-MPRA regulatory region 1466 Neighboring gene ybeY metalloendoribonuclease Neighboring gene chromosome 21 open reading frame 58

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • MCM3 minichromosome maintenance deficient 3 associated protein antisense
  • MCM3AP antisense RNA 1 (non-protein coding)
  • minichromosome maintenance complex component 3 associated protein antisense

Clone Names

  • FLJ10508, MGC61921

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002776.4 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon near the 5' end compared to variant 1.
    Source sequence(s)
    AP001469, BC059792
    Related
    ENST00000455567.2
  2. NR_110565.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK001370, AP001469
    Related
    ENST00000414659.5
  3. NR_110566.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) includes an alternate exon and extends past a splice site used in variant 1. This variant may be partial at its 3' end.
    Source sequence(s)
    AP001469, BC047759
    Related
    ENST00000432735.5
  4. NR_110567.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site and extends past a splice site used in variant 1. This variant may be partial at its 3' end.
    Source sequence(s)
    AF426262, AP001469
    Related
    ENST00000421927.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    46229231..46251701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_018118.1: Suppressed sequence

    Description
    NM_018118.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
  2. NM_153753.1: Suppressed sequence

    Description
    NM_153753.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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