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TSPEAR-AS2 TSPEAR antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 114043, updated on 25-Jan-2022

Summary

Official Symbol
TSPEAR-AS2provided by HGNC
Official Full Name
TSPEAR antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:16428
See related
AllianceGenome:HGNC:16428
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf90
Expression
Broad expression in spleen (RPKM 1.2), testis (RPKM 0.9) and 15 other tissues See more
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Genomic context

See TSPEAR-AS2 in Genome Data Viewer
Location:
21q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (44517215..44518977)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (45937098..45938860)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2575 Neighboring gene TSPEAR antisense RNA 1 Neighboring gene thrombospondin type laminin G domain and EAR repeats Neighboring gene keratin associated protein 10-1 Neighboring gene Sharpr-MPRA regulatory region 850

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026547.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AF426269, DA908807
  2. NR_026548.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, as compared to variant 1.
    Source sequence(s)
    AF426270, DA908807

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    44517215..44518977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153204.1: Suppressed sequence

    Description
    NM_153204.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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