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TOE1 target of EGR1, exonuclease [ Homo sapiens (human) ]

Gene ID: 114034, updated on 12-Aug-2018

Summary

Official Symbol
TOE1provided by HGNC
Official Full Name
target of EGR1, exonucleaseprovided by HGNC
Primary source
HGNC:HGNC:15954
See related
Ensembl:ENSG00000132773 MIM:613931; Vega:OTTHUMG00000007678
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCH7; hCaf1z
Expression
Ubiquitous expression in testis (RPKM 7.9), bone marrow (RPKM 5.3) and 25 other tissues See more
Orthologs

Genomic context

See TOE1 in Genome Data Viewer
Location:
1p34.1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (45339670..45343978)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (45805342..45809650)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378691 Neighboring gene long intergenic non-protein coding RNA 1144 Neighboring gene mutY DNA glycosylase Neighboring gene 4-hydroxyphenylpyruvate dioxygenase like Neighboring gene testis associated actin remodelling kinase 2 Neighboring gene coiled-coil domain containing 163 Neighboring gene metabolism of cobalamin associated C Neighboring gene peroxiredoxin 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Rev rev HIV-1 Rev interacting protein, target of EGR1 member 1 (TOE1), is identified by the in-vitro binding experiments involving cytosolic or nuclear extracts from HeLa cells. The interaction of Rev with TOE1 is increased by RRE PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ13949

Gene Ontology Provided by GOA

Function Evidence Code Pubs
3'-5'-exoribonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
3'-5'-exoribonuclease activity IDA
Inferred from Direct Assay
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific ISM
Inferred from Sequence Model
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
poly(A)-specific ribonuclease activity IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
snRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
RNA phosphodiester bond hydrolysis, exonucleolytic IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
snRNA 3'-end processing IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Cajal body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Cajal body IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
nuclear body IDA
Inferred from Direct Assay
more info
 
nuclear speck IEA
Inferred from Electronic Annotation
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
target of EGR1 protein 1
Names
target of EGR1, member 1 (nuclear)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025077.3NP_079353.3  target of EGR1 protein 1

    See identical proteins and their annotated locations for NP_079353.3

    Status: VALIDATED

    Source sequence(s)
    AY169960, BC009364, BI495405, DA887065
    Consensus CDS
    CCDS521.1
    UniProtKB/Swiss-Prot
    Q96GM8
    Related
    ENSP00000361162.5, OTTHUMP00000009092, ENST00000372090.5, OTTHUMT00000020517
    Conserved Domains (2) summary
    pfam00642
    Location:297320
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam04857
    Location:41257
    CAF1; CAF1 family ribonuclease

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

    Range
    45339670..45343978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024452837.1XP_024308605.1  target of EGR1 protein 1 isoform X2

    Conserved Domains (2) summary
    pfam00642
    Location:280303
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam04857
    Location:2240
    CAF1; CAF1 family ribonuclease
  2. XM_005270412.4XP_005270469.1  target of EGR1 protein 1 isoform X1

    Conserved Domains (2) summary
    pfam00642
    Location:303326
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam04857
    Location:47263
    CAF1; CAF1 family ribonuclease
  3. XM_011540569.3XP_011538871.1  target of EGR1 protein 1 isoform X4

    Conserved Domains (2) summary
    pfam00642
    Location:170193
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam04857
    Location:1130
    CAF1; CAF1 family ribonuclease
  4. XM_005270413.5XP_005270470.1  target of EGR1 protein 1 isoform X3

    Conserved Domains (2) summary
    pfam00642
    Location:251274
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam04857
    Location:2211
    CAF1; CAF1 family ribonuclease

RNA

  1. XR_002959287.1 RNA Sequence

  2. XR_246230.4 RNA Sequence

  3. XR_001736951.2 RNA Sequence

  4. XR_426587.4 RNA Sequence

    Related
    ENST00000495703.5
  5. XR_946532.3 RNA Sequence

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