Format

Send to:

Choose Destination

HENMT1 HEN methyltransferase 1 [ Homo sapiens (human) ]

Gene ID: 113802, updated on 18-Aug-2020

Summary

Official Symbol
HENMT1provided by HGNC
Official Full Name
HEN methyltransferase 1provided by HGNC
Primary source
HGNC:HGNC:26400
See related
Ensembl:ENSG00000162639 MIM:612178
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HEN1; C1orf59
Expression
Biased expression in testis (RPKM 38.3), lymph node (RPKM 5.6) and 13 other tissues See more
Orthologs

Genomic context

See HENMT1 in Genome Data Viewer
Location:
1p13.3
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (108648295..108661474, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (109190910..109204148, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr1.7484 Neighboring gene family with sequence similarity 102 member B Neighboring gene uncharacterized LOC105378890 Neighboring gene pre-mRNA processing factor 38B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ30525, MGC111091

Gene Ontology Provided by GOA

Function Evidence Code Pubs
O-methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
O-methyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA methyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
small RNA 2'-O-methyltransferase IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
RNA methylation IDA
Inferred from Direct Assay
more info
PubMed 
RNA methylation ISS
Inferred from Sequence or Structural Similarity
more info
 
piRNA metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
piRNA metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
production of siRNA involved in RNA interference IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
P granule ISS
Inferred from Sequence or Structural Similarity
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
small RNA 2'-O-methyltransferase
Names
HEN1 methyltransferase homolog 1
hua enhancer 1 homolog 1
NP_001096062.1
NP_653185.2
XP_005270468.1
XP_016855668.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102592.2NP_001096062.1  small RNA 2'-O-methyltransferase

    See identical proteins and their annotated locations for NP_001096062.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC088366, BP378034, DB510959
    Consensus CDS
    CCDS787.1
    UniProtKB/Swiss-Prot
    Q5T8I9
    Related
    ENSP00000499017.1, ENST00000651461.1
    Conserved Domains (1) summary
    cl25638
    Location:17231
    Hen1_L; RNA repair, ligase-Pnkp-associating, region of Hen1
  2. NM_144584.3NP_653185.2  small RNA 2'-O-methyltransferase

    See identical proteins and their annotated locations for NP_653185.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK055087, BC012198, BC088366, DB510959
    Consensus CDS
    CCDS787.1
    UniProtKB/Swiss-Prot
    Q5T8I9
    Related
    ENSP00000359049.5, ENST00000370032.9
    Conserved Domains (1) summary
    cl25638
    Location:17231
    Hen1_L; RNA repair, ligase-Pnkp-associating, region of Hen1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    108648295..108661474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017000179.1XP_016855668.1  small RNA 2'-O-methyltransferase isoform X2

  2. XM_005270411.1XP_005270468.1  small RNA 2'-O-methyltransferase isoform X1

    Conserved Domains (1) summary
    cl17173
    Location:40175
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Support Center