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sarm1 sterile alpha and TIR motif containing 1 [ Electrophorus electricus (electric eel) ]

Gene ID: 113589408, updated on 18-Jun-2024

Summary

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Gene symbol
sarm1
Gene description
sterile alpha and TIR motif containing 1
See related
Ensembl:ENSEEEG00000009383
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
human zebrafish all
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Genomic context

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See sarm1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 15 NC_049549.1 (2437138..2445229, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826669.1 (57963..66241, complement)

Chromosome 15 - NC_049549.1Genomic Context describing neighboring genes Neighboring gene forkhead box N1 Neighboring gene solute carrier family 46 member 1 Neighboring gene scavenger receptor class F, member 1 Neighboring gene Rab interacting lysosomal protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MyD88-independent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to axon injury IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAD(+) hydrolase SARM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049549.1 Reference fEleEle1.pri

    Range
    2437138..2445229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027029050.2 → XP_026884851.2  NAD(+) hydrolase SARM1

    UniProtKB/TrEMBL
    A0A4W4F619
    Related
    ENSEEEP00000019136.2, ENSEEET00000019347.2
    Conserved Domains (3) summary
    cd09501
    Location:404 → 472
    SAM_SARM1-like_repeat1; SAM domain ot SARM1-like proteins, repeat 1
    cd09502
    Location:473 → 542
    SAM_SARM1-like_repeat2; SAM domain of SARM1-like, repeat 2
    smart00255
    Location:553 → 690
    TIR; Toll - interleukin 1 - resistance
Nucleotide Protein
Heading Accession and Version

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