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acod1 aconitate decarboxylase 1 [ Electrophorus electricus (electric eel) ]

Gene ID: 113577118, updated on 18-Jun-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
Ensembl:ENSEEEG00000005766
Gene type
protein coding
RefSeq status
MODEL
Organism
Electrophorus electricus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gymnotiformes; Gymnotoidei; Gymnotidae; Electrophorus
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
101 current fEleEle1.pri (GCF_013358815.1) 2 NC_049536.1 (35518015..35521628, complement)
100 previous assembly Ee_SOAP_WITH_SSPACE (GCF_003665695.1) Unplaced Scaffold NW_020826077.1 (305021..308627)

Chromosome 2 - NC_049536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113577114 Neighboring gene uncharacterized LOC113577119 Neighboring gene potassium channel tetramerisation domain containing 12.1 Neighboring gene LIM domain 7a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Electrophorus electricus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEleEle1.pri

Genomic

  1. NC_049536.1 Reference fEleEle1.pri

    Range
    35518015..35521628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027009598.2 → XP_026865399.2  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A4W4EH80
    Related
    ENSEEEP00000011409.2, ENSEEET00000011543.2
    Conserved Domains (1) summary
    pfam03972
    Location:14 → 448
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
Heading Accession and Version

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