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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_007372.3 → NP_031398.2 ATP-dependent RNA helicase DDX42
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC015651, BC015505, BC093081
- Consensus CDS
-
CCDS32704.1
- UniProtKB/Swiss-Prot
- A6NML1, A8KA43, O75619, Q68G51, Q86XP3, Q96BK1, Q96HR7, Q9Y3V8
- Related
- ENSP00000464050.1, ENST00000578681.5
- Conserved Domains (3) summary
-
- PRK10590
Location:254 → 688
- PRK10590; ATP-dependent RNA helicase RhlE; Provisional
- cd00079
Location:470 → 601
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd00268
Location:255 → 459
- DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
-
NM_203499.3 → NP_987095.1 ATP-dependent RNA helicase DDX42
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an exon in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AB036090, AC015651, BC015505, DA440475
- Consensus CDS
-
CCDS32704.1
- UniProtKB/Swiss-Prot
- A6NML1, A8KA43, O75619, Q68G51, Q86XP3, Q96BK1, Q96HR7, Q9Y3V8
- Related
- ENSP00000374574.2, ENST00000389924.7
- Conserved Domains (3) summary
-
- PRK10590
Location:254 → 688
- PRK10590; ATP-dependent RNA helicase RhlE; Provisional
- cd00079
Location:470 → 601
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- cd00268
Location:255 → 459
- DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
63773800..63819317
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047435282.1 → XP_047291238.1 ATP-dependent RNA helicase DDX42 isoform X1
- UniProtKB/Swiss-Prot
- A6NML1, A8KA43, O75619, Q68G51, Q86XP3, Q96BK1, Q96HR7, Q9Y3V8
-
XM_047435281.1 → XP_047291237.1 ATP-dependent RNA helicase DDX42 isoform X1
- UniProtKB/Swiss-Prot
- A6NML1, A8KA43, O75619, Q68G51, Q86XP3, Q96BK1, Q96HR7, Q9Y3V8
- Related
- ENSP00000463561.1, ENST00000583590.5
-
XM_047435283.1 → XP_047291239.1 ATP-dependent RNA helicase DDX42 isoform X2
- UniProtKB/TrEMBL
-
B3KX23
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
64644531..64690152
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054314931.1 → XP_054170906.1 ATP-dependent RNA helicase DDX42 isoform X1
- UniProtKB/Swiss-Prot
- A6NML1, A8KA43, O75619, Q68G51, Q86XP3, Q96BK1, Q96HR7, Q9Y3V8
-
XM_054314930.1 → XP_054170905.1 ATP-dependent RNA helicase DDX42 isoform X1
- UniProtKB/Swiss-Prot
- A6NML1, A8KA43, O75619, Q68G51, Q86XP3, Q96BK1, Q96HR7, Q9Y3V8
-
XM_054314932.1 → XP_054170907.1 ATP-dependent RNA helicase DDX42 isoform X2
- UniProtKB/TrEMBL
-
B3KX23