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MTFR2 mitochondrial fission regulator 2 [ Homo sapiens (human) ]

Gene ID: 113115, updated on 23-Nov-2023

Summary

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Official Symbol
MTFR2provided by HGNC
Official Full Name
mitochondrial fission regulator 2provided by HGNC
Primary source
HGNC:HGNC:21115
See related
Ensembl:ENSG00000146410 AllianceGenome:HGNC:21115
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DUFD1; FAM54A
Summary
Predicted to be involved in aerobic respiration and mitochondrial fission. Predicted to be active in mitochondrion. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis (RPKM 2.0), bone marrow (RPKM 1.8) and 12 other tissues See more
Orthologs
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Genomic context

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See MTFR2 in Genome Data Viewer
Location:
6q23.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (136231034..136250311, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (137419143..137438419, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (136552172..136571449, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 7B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:136358942-136359442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:136359443-136359943 Neighboring gene PDE7B antisense RNA 1 Neighboring gene cytochrome c oxidase subunit 5B pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:136388797-136389341 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25109 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25110 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:136609778-136610374 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:136610456-136611655 Neighboring gene uncharacterized LOC124901408 Neighboring gene BCL2 associated transcription factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Upregulated expression of MTFR2 as a novel biomarker predicts poor prognosis in hepatocellular carcinoma by bioinformatics analysis. Li D, et al. Future Oncol, 2021 Aug. PMID 34156259
  2. Evaluation of clinical value and potential mechanism of MTFR2 in lung adenocarcinoma via bioinformatics. Chen C, et al. BMC Cancer, 2021 May 26. PMID 34039308, Free PMC Article
  3. Mitochondrial fission regulator 2 (MTFR2) promotes growth, migration, invasion and tumour progression in breast cancer cells. Lu G, et al. Aging (Albany NY), 2019 Nov 18. PMID 31740625, Free PMC Article
  4. Transcription factor HOXC10 activates the expression of MTFR2 to regulate the proliferation, invasion and migration of colorectal cancer cells. Xie Y, et al. Mol Med Rep, 2021 Nov. PMID 34523692, Free PMC Article
  5. Rapid degradation of mutant SLC25A46 by the ubiquitin-proteasome system results in MFN1/2-mediated hyperfusion of mitochondria. Steffen J, et al. Mol Biol Cell, 2017 Mar 1. PMID 28057766, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Transcription factor HOXC10 activates the expression of MTFR2 to regulate the proliferation, invasion and migration of colorectal cancer cells.
    Title: Transcription factor HOXC10 activates the expression of MTFR2 to regulate the proliferation, invasion and migration of colorectal cancer cells.
  2. Upregulated expression of MTFR2 as a novel biomarker predicts poor prognosis in hepatocellular carcinoma by bioinformatics analysis.
    Title: Upregulated expression of MTFR2 as a novel biomarker predicts poor prognosis in hepatocellular carcinoma by bioinformatics analysis.
  3. Evaluation of clinical value and potential mechanism of MTFR2 in lung adenocarcinoma via bioinformatics.
    Title: Evaluation of clinical value and potential mechanism of MTFR2 in lung adenocarcinoma via bioinformatics.
  4. Mitochondrial fission regulator 2 (MTFR2) promotes growth, migration, invasion and tumour progression in breast cancer cells.
    Title: Mitochondrial fission regulator 2 (MTFR2) promotes growth, migration, invasion and tumour progression in breast cancer cells.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in aerobic respiration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in aerobic respiration ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in mitochondrial fission IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitochondrial fission ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in mitochondrion organization ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
mitochondrial fission regulator 2
Names
DUF729 domain-containing protein 1
family with sequence similarity 54, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099286.3 → NP_001092756.1  mitochondrial fission regulator 2 isoform a

    See identical proteins and their annotated locations for NP_001092756.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Both variants 1 and 2 encode the same protein (isoform a).
    Source sequence(s)
    BC063688, DB016393
    Consensus CDS
    CCDS5176.1
    UniProtKB/Swiss-Prot
    A8K8D8, E1P585, Q5JWR7, Q6P444, Q6ZUE8, Q7L3U6, Q9BZ39
    Related
    ENSP00000395232.1, ENST00000420702.6
    Conserved Domains (1) summary
    pfam05308
    Location:25 → 286
    Mito_fiss_reg; Mitochondrial fission regulator

  2. NM_001318738.2 → NP_001305667.1  mitochondrial fission regulator 2 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site and contains an alternate exon in the 5' region compared to variant 1. It initiates translation at a downstream start codon. The encoded isoform (b) has a shorter N-terminus than isoform a.
    Source sequence(s)
    AK125758, DA799177
    UniProtKB/Swiss-Prot
    Q6P444
    Conserved Domains (1) summary
    pfam05308
    Location:1 → 243
    Mito_fiss_reg; Mitochondrial fission regulator

  3. NM_138419.5 → NP_612428.2  mitochondrial fission regulator 2 isoform a

    See identical proteins and their annotated locations for NP_612428.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein (isoform a).
    Source sequence(s)
    BC011716, BG831782, DA799177
    Consensus CDS
    CCDS5176.1
    UniProtKB/Swiss-Prot
    A8K8D8, E1P585, Q5JWR7, Q6P444, Q6ZUE8, Q7L3U6, Q9BZ39
    Related
    ENSP00000407010.2, ENST00000451457.6
    Conserved Domains (1) summary
    pfam05308
    Location:25 → 286
    Mito_fiss_reg; Mitochondrial fission regulator

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    136231034..136250311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011535413.3 → XP_011533715.1  mitochondrial fission regulator 2 isoform X1

    See identical proteins and their annotated locations for XP_011533715.1

    UniProtKB/Swiss-Prot
    Q6P444
    Conserved Domains (1) summary
    pfam05308
    Location:1 → 243
    Mito_fiss_reg; Mitochondrial fission regulator

  2. XM_011535412.3 → XP_011533714.1  mitochondrial fission regulator 2 isoform X1

    See identical proteins and their annotated locations for XP_011533714.1

    UniProtKB/Swiss-Prot
    Q6P444
    Conserved Domains (1) summary
    pfam05308
    Location:1 → 243
    Mito_fiss_reg; Mitochondrial fission regulator

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    137419143..137438419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054354143.1 → XP_054210118.1  mitochondrial fission regulator 2 isoform X1

  2. XM_054354144.1 → XP_054210119.1  mitochondrial fission regulator 2 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6P444.2 GenPept UniProtKB/Swiss-Prot:Q6P444

Gene LinkOut

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