U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCAT2 S-phase cancer associated transcript 2 [ Homo sapiens (human) ]

Gene ID: 112935960, updated on 17-Jun-2024

Summary

Official Symbol
SCAT2provided by HGNC
Official Full Name
S-phase cancer associated transcript 2provided by HGNC
Primary source
HGNC:HGNC:53976
See related
Ensembl:ENSG00000257596 AllianceGenome:HGNC:53976
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CBX5-AS1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SCAT2 in Genome Data Viewer
Location:
12q13.13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (54262615..54279063)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (54229192..54245640)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (54656399..54672847)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene microRNA 3198-2 Neighboring gene chromobox 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:54642790-54642989 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:54650247-54650908 Neighboring gene RNA, 7SL, cytoplasmic 390, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6436 Neighboring gene CRISPRi-FlowFISH-validated NFE2 regulatory element 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 Neighboring gene CRISPRi-FlowFISH-validated HNRNPA1 regulatory element Neighboring gene nuclear factor, erythroid 2 Neighboring gene CRISPRi-FlowFISH-validated COPZ1 and HNRNPA1 regulatory element

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_157844.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078778
    Related
    ENST00000547177.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    54262615..54279063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    54229192..54245640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)